Index of Names

Modules Classes Names

A

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

action - openflexure_microscope_server.ui.ActionButton.action
action_button_for - openflexure_microscope_server.ui.action_button_for
ActionButton - openflexure_microscope_server.ui.ActionButton
active_detector - openflexure_microscope_server.things.camera.BaseCamera.active_detector
add_image - openflexure_microscope_server.things.camera.CameraMemoryBuffer.add_image
add_static_file - openflexure_microscope_server.server.serve_static_files.add_static_file
add_static_files - openflexure_microscope_server.server.serve_static_files.add_static_files
add_v2_endpoints - openflexure_microscope_server.server.legacy_api.add_v2_endpoints
adjust_shutter_and_gain_from_raw - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.adjust_shutter_and_gain_from_raw
adjust_white_balance_from_raw - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.adjust_white_balance_from_raw
all_files - openflexure_microscope_server.scan_directories.ScanDirectory.all_files
all_scans - openflexure_microscope_server.scan_directories.ScanDirectoryManager.all_scans
all_scans_info - openflexure_microscope_server.scan_directories.ScanDirectoryManager.all_scans_info
analog_gain - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.ExposureTest.analog_gain
analogue_gain - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.analogue_gain
analogue_gain.setter - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.analogue_gain.setter
append_record - openflexure_microscope_server.logging.OFMHandler.append_record
ArrayModel - openflexure_microscope_server.things.camera.ArrayModel
as_flat_rounded_list - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.as_flat_rounded_list
assert_calibrated - openflexure_microscope_server.things.camera_stage_mapping.CameraStageMapper.assert_calibrated
attach_to_server - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.attach_to_server
auto_expose_from_minimum - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.auto_expose_from_minimum
autofocus - openflexure_microscope_server.things.autofocus
autofocus_dz
- openflexure_microscope_server.scan_directories.ScanData.autofocus_dz
- openflexure_microscope_server.things.autofocus.StackParams.autofocus_dz
- openflexure_microscope_server.things.smart_scan.SmartScanThing.autofocus_dz
autofocus_on - openflexure_microscope_server.scan_directories.ScanData.autofocus_on
AutofocusDep - openflexure_microscope_server.things.smart_scan.AutofocusDep
AutofocusThing - openflexure_microscope_server.things.autofocus.AutofocusThing
axis_inverted
- openflexure_microscope_server.things.stage.BaseStage.axis_inverted
- openflexure_microscope_server.things.stage.dummy.DummyStage.axis_inverted
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.axis_inverted
axis_names - openflexure_microscope_server.things.stage.BaseStage.axis_names

B

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

background_data
- openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm.background_data
- openflexure_microscope_server.background_detect.ColourChannelDetectLUV.background_data
background_data.setter - openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm.background_data.setter
background_detect - openflexure_microscope_server.background_detect
background_detector_data - openflexure_microscope_server.things.camera.BaseCamera.background_detector_data
background_detector_data.setter - openflexure_microscope_server.things.camera.BaseCamera.background_detector_data.setter
background_detector_status - openflexure_microscope_server.things.camera.BaseCamera.background_detector_status
background_detectors - openflexure_microscope_server.things.camera.BaseCamera.background_detectors
background_mask - openflexure_microscope_server.background_detect.ColourChannelDetectLUV.background_mask
BackgroundDetectAlgorithm - openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm
BackgroundDetectorStatus - openflexure_microscope_server.background_detect.BackgroundDetectorStatus
backlash_correction - openflexure_microscope_server.things.autofocus.StackParams.backlash_correction
base_dir - openflexure_microscope_server.scan_directories.ScanDirectoryManager.base_dir
BaseCamera - openflexure_microscope_server.things.camera.BaseCamera
BaseStage - openflexure_microscope_server.things.stage.BaseStage
BaseStitcher - openflexure_microscope_server.stitching.BaseStitcher
BG_COLOR - openflexure_microscope_server.things.camera.simulation.BG_COLOR
bit_depth
- openflexure_microscope_server.things.camera.picamera.SensorMode.bit_depth
- openflexure_microscope_server.things.camera.picamera.SensorModeSelector.bit_depth
blank_canvas - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.blank_canvas
blobs - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.blobs
buffer_id - openflexure_microscope_server.things.autofocus.CaptureInfo.buffer_id
button_primary - openflexure_microscope_server.ui.ActionButton.button_primary

C

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

calibrate_1d - openflexure_microscope_server.things.camera_stage_mapping.CameraStageMapper.calibrate_1d
calibrate_lens_shading - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.calibrate_lens_shading
calibrate_white_balance - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.calibrate_white_balance
calibrate_xy - openflexure_microscope_server.things.camera_stage_mapping.CameraStageMapper.calibrate_xy
camera
- openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.camera
- openflexure_microscope_server.things.camera
camera_configs - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.camera_configs
camera_configuration - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.camera_configuration
camera_index - openflexure_microscope_server.things.camera.opencv.OpenCVCamera.camera_index
camera_num - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.camera_num
camera_stage_mapping - openflexure_microscope_server.things.camera_stage_mapping
CameraDependency - openflexure_microscope_server.things.camera.CameraDependency
CameraMemoryBuffer - openflexure_microscope_server.things.camera.CameraMemoryBuffer
CameraStageMapper - openflexure_microscope_server.things.camera_stage_mapping.CameraStageMapper
can_terminate - openflexure_microscope_server.ui.ActionButton.can_terminate
canvas - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.canvas
canvas_shape - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.canvas_shape
cap - openflexure_microscope_server.things.camera.opencv.OpenCVCamera.cap
capture_and_save - openflexure_microscope_server.things.camera.BaseCamera.capture_and_save
capture_array
- openflexure_microscope_server.things.camera.BaseCamera.capture_array
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera.capture_array
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.capture_array
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.capture_array
capture_downsampled_array - openflexure_microscope_server.things.camera.BaseCamera.capture_downsampled_array
capture_image
- openflexure_microscope_server.things.camera.BaseCamera.capture_image
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.capture_image
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.capture_image
capture_jpeg
- openflexure_microscope_server.things.camera.BaseCamera.capture_jpeg
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera.capture_jpeg
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.capture_jpeg
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.capture_jpeg
capture_metadata - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.capture_metadata
capture_stack_image - openflexure_microscope_server.things.autofocus.AutofocusThing.capture_stack_image
capture_to_memory - openflexure_microscope_server.things.camera.BaseCamera.capture_to_memory
CaptureError - openflexure_microscope_server.things.camera.CaptureError
CaptureInfo - openflexure_microscope_server.things.autofocus.CaptureInfo
Cb - openflexure_microscope_server.things.camera.picamera.LensShading.Cb
channel_tolerance - openflexure_microscope_server.background_detect.ColourChannelDetectSettings.channel_tolerance
ChannelDistributions - openflexure_microscope_server.background_detect.ChannelDistributions
channels_from_bayer_array - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.channels_from_bayer_array
check_convergence - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.check_convergence
check_free_disk_space - openflexure_microscope_server.scan_directories.ScanDirectoryManager.check_free_disk_space
check_stack_result - openflexure_microscope_server.things.autofocus.AutofocusThing.check_stack_result
check_static_dir - openflexure_microscope_server.server.serve_static_files.check_static_dir
clear - openflexure_microscope_server.things.camera.CameraMemoryBuffer.clear
clear_buffers - openflexure_microscope_server.things.camera.BaseCamera.clear_buffers
clear_history - openflexure_microscope_server.things.camera_stage_mapping.RecordedMove.clear_history
closest_focus_site - openflexure_microscope_server.scan_planners.ScanPlanner.closest_focus_site
colour_correction_matrix - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.colour_correction_matrix
colour_correction_matrix.setter - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.colour_correction_matrix.setter
colour_gains - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.colour_gains
colour_gains.setter - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.colour_gains.setter
ColourChannelDetectLUV - openflexure_microscope_server.background_detect.ColourChannelDetectLUV
ColourChannelDetectSettings - openflexure_microscope_server.background_detect.ColourChannelDetectSettings
command - openflexure_microscope_server.stitching.BaseStitcher.command
CommandOutput - openflexure_microscope_server.things.system.CommandOutput
COMMIT_REGEX - openflexure_microscope_server.utilities.COMMIT_REGEX
configure_logging - openflexure_microscope_server.logging.configure_logging
confirmation_message - openflexure_microscope_server.ui.ActionButton.confirmation_message
CoordinateType - openflexure_microscope_server.things.camera_stage_mapping.CoordinateType
copy_alsc_section - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.copy_alsc_section
correct_colour_gains_for_lens_shading - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.correct_colour_gains_for_lens_shading
correlation_resize
- openflexure_microscope_server.scan_directories.ScanData.correlation_resize
- openflexure_microscope_server.stitching.BaseStitcher.correlation_resize
Cr - openflexure_microscope_server.things.camera.picamera.LensShading.Cr
created - openflexure_microscope_server.scan_directories.ScanInfo.created
created_time - openflexure_microscope_server.scan_directories.ScanDirectory.created_time
crop_limits - openflexure_microscope_server.things.camera.picamera.SensorMode.crop_limits
CSMDep - openflexure_microscope_server.things.smart_scan.CSMDep
CSMUncalibratedError - openflexure_microscope_server.things.camera_stage_mapping.CSMUncalibratedError
customise_server - openflexure_microscope_server.server.customise_server

D

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

data_dict - openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.data_dict
DEFAULT_OVERLAP - openflexure_microscope_server.stitching.DEFAULT_OVERLAP
DEFAULT_RESIZE - openflexure_microscope_server.stitching.DEFAULT_RESIZE
default_tuning - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.default_tuning
delete_all_scans - openflexure_microscope_server.things.smart_scan.SmartScanThing.delete_all_scans
delete_scan
- openflexure_microscope_server.scan_directories.ScanDirectoryManager.delete_scan
- openflexure_microscope_server.things.smart_scan.SmartScanThing.delete_scan
detector_name - openflexure_microscope_server.things.camera.BaseCamera.detector_name
detector_name.setter - openflexure_microscope_server.things.camera.BaseCamera.detector_name.setter
dir_path - openflexure_microscope_server.scan_directories.ScanDirectory.dir_path
discard_frames
- openflexure_microscope_server.things.camera.BaseCamera.discard_frames
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera.discard_frames
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.discard_frames
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.discard_frames
distance_between - openflexure_microscope_server.scan_planners.distance_between
download_zip - openflexure_microscope_server.things.smart_scan.SmartScanThing.download_zip
downsample - openflexure_microscope_server.things.camera.downsample
downsampled_array_factor - openflexure_microscope_server.things.camera.BaseCamera.downsampled_array_factor
downsampled_channels - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.downsampled_channels
dummy - openflexure_microscope_server.things.stage.dummy
DummyStage - openflexure_microscope_server.things.stage.dummy.DummyStage
duration - openflexure_microscope_server.scan_directories.ScanData.duration
dx - openflexure_microscope_server.scan_directories.ScanData.dx
dy - openflexure_microscope_server.scan_directories.ScanData.dy
dzi - openflexure_microscope_server.scan_directories.ScanInfo.dzi

E

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

emit - openflexure_microscope_server.logging.OFMHandler.emit
enforce_xy_tuple - openflexure_microscope_server.scan_planners.enforce_xy_tuple
enforce_xyz_tuple - openflexure_microscope_server.scan_planners.enforce_xyz_tuple
error - openflexure_microscope_server.things.system.CommandOutput.error
ErrorCapturingThread - openflexure_microscope_server.utilities.ErrorCapturingThread
exists - openflexure_microscope_server.scan_directories.ScanDirectoryManager.exists
exposure_limits - openflexure_microscope_server.things.camera.picamera.SensorMode.exposure_limits
exposure_time
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.exposure_time
- openflexure_microscope_server.things.camera.picamera_recalibrate_utils.ExposureTest.exposure_time
exposure_time.setter - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.exposure_time.setter
ExposureTest - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.ExposureTest
ExternalSigkillError - openflexure_microscope_server.stitching.ExternalSigkillError

F

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

fast_autofocus - openflexure_microscope_server.things.autofocus.AutofocusThing.fast_autofocus
filename - openflexure_microscope_server.things.autofocus.CaptureInfo.filename
filter - openflexure_microscope_server.logging.UvicornAccessFilter.filter
FinalStitcher - openflexure_microscope_server.stitching.FinalStitcher
flash_led - openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.flash_led
flat_lens_shading - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.flat_lens_shading
flat_lens_shading_chrominance - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.flat_lens_shading_chrominance
focus_rel - openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.focus_rel
focused_locations - openflexure_microscope_server.scan_planners.ScanPlanner.focused_locations
format - openflexure_microscope_server.things.camera.picamera.SensorMode.format
fps - openflexure_microscope_server.things.camera.picamera.SensorMode.fps
frame_interval - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.frame_interval
full_auto_calibrate - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.full_auto_calibrate

G

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

generate_blobs - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.generate_blobs
generate_canvas - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.generate_canvas
generate_frame - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.generate_frame
generate_image - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.generate_image
generate_sprites - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.generate_sprites
get_16x12_grid - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.get_16x12_grid
get_file_path_from - openflexure_microscope_server.scan_directories.ScanDirectoryManager.get_file_path_from
get_file_path_from_img_dir - openflexure_microscope_server.scan_directories.ScanDirectoryManager.get_file_path_from_img_dir
get_files_in_zip - openflexure_microscope_server.scan_directories.get_files_in_zip
get_final_stitch_name - openflexure_microscope_server.scan_directories.ScanDirectory.get_final_stitch_name
get_final_stitch_path - openflexure_microscope_server.scan_directories.ScanDirectoryManager.get_final_stitch_path
get_image - openflexure_microscope_server.things.camera.CameraMemoryBuffer.get_image
get_latest_preview - openflexure_microscope_server.things.smart_scan.SmartScanThing.get_latest_preview
get_modified_time - openflexure_microscope_server.scan_directories.ScanDirectory.get_modified_time
get_next_location_and_z_estimate
- openflexure_microscope_server.scan_planners.ScanPlanner.get_next_location_and_z_estimate
- openflexure_microscope_server.scan_planners.SmartSpiral.get_next_location_and_z_estimate
get_sample_coverage - openflexure_microscope_server.background_detect.ColourChannelDetectLUV.get_sample_coverage
get_scan_data_dict - openflexure_microscope_server.scan_directories.ScanDirectoryManager.get_scan_data_dict
get_scan_data_path - openflexure_microscope_server.scan_directories.ScanDirectoryManager.get_scan_data_path
get_scan_files - openflexure_microscope_server.scan_directories.ScanDirectory.get_scan_files
get_scan_thumbnail - openflexure_microscope_server.things.smart_scan.SmartScanThing.get_scan_thumbnail
get_stage_position - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.get_stage_position
get_static_ccm - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.get_static_ccm
get_stitch_file - openflexure_microscope_server.things.smart_scan.SmartScanThing.get_stitch_file
get_things_state - openflexure_microscope_server.things.system.OpenFlexureSystem.get_things_state
get_tuning_algo - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.get_tuning_algo
get_xyz_position - openflexure_microscope_server.things.stage.BaseStage.get_xyz_position
glyph_shape - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.glyph_shape
grab_as_array - openflexure_microscope_server.things.camera.BaseCamera.grab_as_array
grab_jpeg - openflexure_microscope_server.things.camera.BaseCamera.grab_jpeg
grab_jpeg_size - openflexure_microscope_server.things.camera.BaseCamera.grab_jpeg_size
grids_from_lst - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.grids_from_lst

H

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

I

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

image_count - openflexure_microscope_server.scan_directories.ScanData.image_count
image_is_sample
IMAGE_REGEX - openflexure_microscope_server.scan_directories.IMAGE_REGEX
image_resolution - openflexure_microscope_server.things.camera_stage_mapping.CameraStageMapper.image_resolution
image_to_stage_displacement_matrix - openflexure_microscope_server.things.camera_stage_mapping.CameraStageMapper.image_to_stage_displacement_matrix
imaged_locations - openflexure_microscope_server.scan_planners.ScanPlanner.imaged_locations
images_dir
images_to_save - openflexure_microscope_server.things.autofocus.StackParams.images_to_save
img_dir_for - openflexure_microscope_server.scan_directories.ScanDirectoryManager.img_dir_for
IMG_DIR_NAME - openflexure_microscope_server.scan_directories.IMG_DIR_NAME
img_undershoot - openflexure_microscope_server.things.autofocus.StackParams.img_undershoot
index_of_algorithm - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.index_of_algorithm
instantaneous_position - openflexure_microscope_server.things.stage.dummy.DummyStage.instantaneous_position
invert_axis_direction - openflexure_microscope_server.things.stage.BaseStage.invert_axis_direction
is_raspberrypi - openflexure_microscope_server.things.system.OpenFlexureSystem.is_raspberrypi

J

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

K

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

kill_mjpeg_streams - openflexure_microscope_server.things.camera.BaseCamera.kill_mjpeg_streams

L

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

label - openflexure_microscope_server.ui.PropertyControl.label
last_calibration - openflexure_microscope_server.things.camera_stage_mapping.CameraStageMapper.last_calibration
latest_preview_stitch_path - openflexure_microscope_server.things.smart_scan.SmartScanThing.latest_preview_stitch_path
latest_preview_stitch_time - openflexure_microscope_server.things.smart_scan.SmartScanThing.latest_preview_stitch_time
latest_scan_name - openflexure_microscope_server.things.smart_scan.SmartScanThing.latest_scan_name
legacy_api - openflexure_microscope_server.server.legacy_api
lens_shading_is_static - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.lens_shading_is_static
lens_shading_tables - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.lens_shading_tables
lens_shading_tables.setter - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.lens_shading_tables.setter
LensShading - openflexure_microscope_server.things.camera.picamera.LensShading
LensShadingTables - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.LensShadingTables
level - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.ExposureTest.level
load_default_tuning - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.load_default_tuning
load_sample - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.load_sample
log_buffer - openflexure_microscope_server.stitching.FinalStitcher.log_buffer
log_history - openflexure_microscope_server.logging.OFMHandler.log_history
LOGGER
- openflexure_microscope_server.scan_planners.LOGGER
- openflexure_microscope_server.things.camera.LOGGER
- openflexure_microscope_server.utilities.LOGGER
logger - openflexure_microscope_server.stitching.FinalStitcher.logger
logging - openflexure_microscope_server.logging
looping_autofocus - openflexure_microscope_server.things.autofocus.AutofocusThing.looping_autofocus
lores_mjpeg_stream - openflexure_microscope_server.things.camera.BaseCamera.lores_mjpeg_stream
lst_from_camera - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.lst_from_camera
lst_from_channels - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.lst_from_channels
lst_from_grids - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.lst_from_grids
lst_is_static - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.lst_is_static
luminance - openflexure_microscope_server.things.camera.picamera.LensShading.luminance

M

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

make_name_safe - openflexure_microscope_server.utilities.make_name_safe
make_path_safe - openflexure_microscope_server.utilities.make_path_safe
manual_camera_settings
- openflexure_microscope_server.things.camera.BaseCamera.manual_camera_settings
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.manual_camera_settings
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.manual_camera_settings
mark_location_visited
- openflexure_microscope_server.scan_planners.ScanPlanner.mark_location_visited
- openflexure_microscope_server.scan_planners.SmartSpiral.mark_location_visited
max_attempts - openflexure_microscope_server.things.autofocus.StackParams.max_attempts
max_dist - openflexure_microscope_server.scan_directories.ScanData.max_dist
max_images_to_test - openflexure_microscope_server.things.autofocus.StackParams.max_images_to_test
max_range - openflexure_microscope_server.things.smart_scan.SmartScanThing.max_range
means - openflexure_microscope_server.background_detect.ChannelDistributions.means
media_type
- openflexure_microscope_server.things.camera.JPEGBlob.media_type
- openflexure_microscope_server.things.camera.PNGBlob.media_type
microscope_id - openflexure_microscope_server.things.system.OpenFlexureSystem.microscope_id
microscope_id.setter - openflexure_microscope_server.things.system.OpenFlexureSystem.microscope_id.setter
min_images_to_test - openflexure_microscope_server.things.autofocus.StackParams.min_images_to_test
min_overlap - openflexure_microscope_server.stitching.BaseStitcher.min_overlap
min_sample_coverage - openflexure_microscope_server.background_detect.ColourChannelDetectSettings.min_sample_coverage
MissingBackgroundDataError - openflexure_microscope_server.background_detect.MissingBackgroundDataError
MissingCalibrationError - openflexure_microscope_server.things.camera.picamera.MissingCalibrationError
mjpeg_bitrate - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.mjpeg_bitrate
mjpeg_stream - openflexure_microscope_server.things.camera.BaseCamera.mjpeg_stream
modal_progress - openflexure_microscope_server.ui.ActionButton.modal_progress
model_config
- openflexure_microscope_server.background_detect.ColourChannelDetectSettings.model_config
- openflexure_microscope_server.scan_directories.ScanData.model_config
modified - openflexure_microscope_server.scan_directories.ScanInfo.modified
monitor_sharpness - openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.monitor_sharpness
move_absolute - openflexure_microscope_server.things.stage.BaseStage.move_absolute
move_data - openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.move_data
move_in_image_coordinates - openflexure_microscope_server.things.camera_stage_mapping.CameraStageMapper.move_in_image_coordinates
move_relative - openflexure_microscope_server.things.stage.BaseStage.move_relative
move_to_xyz_position - openflexure_microscope_server.things.stage.BaseStage.move_to_xyz_position
MoveHistory - openflexure_microscope_server.things.camera_stage_mapping.MoveHistory
moves_between - openflexure_microscope_server.scan_planners.SmartSpiral.moves_between
moving
- openflexure_microscope_server.things.stage.BaseStage.moving
- openflexure_microscope_server.things.stage.dummy.DummyStage.moving
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.moving

N

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

name
- openflexure_microscope_server.scan_directories.ScanDirectory.name
- openflexure_microscope_server.scan_directories.ScanInfo.name
NEIGHBOUR_CUTOFF - openflexure_microscope_server.scan_planners.NEIGHBOUR_CUTOFF
new_scan_dir - openflexure_microscope_server.scan_directories.ScanDirectoryManager.new_scan_dir
NO_CACHE_HEADERS - openflexure_microscope_server.server.serve_static_files.NO_CACHE_HEADERS
NoImageInMemoryError - openflexure_microscope_server.things.camera.NoImageInMemoryError
noise_level - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.noise_level
NotEnoughFreeSpaceError - openflexure_microscope_server.scan_directories.NotEnoughFreeSpaceError
notify_on_success - openflexure_microscope_server.ui.ActionButton.notify_on_success
number_of_images - openflexure_microscope_server.scan_directories.ScanInfo.number_of_images

O

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

OFM_HANDLER - openflexure_microscope_server.logging.OFM_HANDLER
OFM_LOG_FILE - openflexure_microscope_server.logging.OFM_LOG_FILE
OFMHandler - openflexure_microscope_server.logging.OFMHandler
opencv - openflexure_microscope_server.things.camera.opencv
OpenCVCamera - openflexure_microscope_server.things.camera.opencv.OpenCVCamera
openflexure_microscope_server - openflexure_microscope_server
OpenFlexureSystem - openflexure_microscope_server.things.system.OpenFlexureSystem
output - openflexure_microscope_server.things.system.CommandOutput.output
output_size - openflexure_microscope_server.things.camera.picamera.SensorModeSelector.output_size
outputframe - openflexure_microscope_server.things.camera.picamera.PicameraStreamOutput.outputframe
overlap
- openflexure_microscope_server.scan_directories.ScanData.overlap
- openflexure_microscope_server.things.smart_scan.SmartScanThing.overlap

P

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

P - openflexure_microscope_server.utilities.P
parse_timedelta - openflexure_microscope_server.scan_directories.ScanData.parse_timedelta
parse_timestamp - openflexure_microscope_server.scan_directories.ScanData.parse_timestamp
parse_unknown_as_none - openflexure_microscope_server.scan_directories.ScanData.parse_unknown_as_none
path_for - openflexure_microscope_server.scan_directories.ScanDirectoryManager.path_for
path_history - openflexure_microscope_server.scan_planners.ScanPlanner.path_history
picamera - openflexure_microscope_server.things.camera.picamera
picamera_recalibrate_utils - openflexure_microscope_server.things.camera.picamera_recalibrate_utils
PicameraStreamOutput - openflexure_microscope_server.things.camera.picamera.PicameraStreamOutput
PNGBlob - openflexure_microscope_server.things.camera.PNGBlob
poll_interval - openflexure_microscope_server.ui.ActionButton.poll_interval
portal
- openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.portal
- openflexure_microscope_server.things.camera.picamera.PicameraStreamOutput.portal
position
- openflexure_microscope_server.things.autofocus.CaptureInfo.position
- openflexure_microscope_server.things.stage.BaseStage.position
position_planned - openflexure_microscope_server.scan_planners.ScanPlanner.position_planned
position_visited - openflexure_microscope_server.scan_planners.ScanPlanner.position_visited
PreviewStitcher - openflexure_microscope_server.stitching.PreviewStitcher
primary_calibration_actions
- openflexure_microscope_server.things.camera.BaseCamera.primary_calibration_actions
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.primary_calibration_actions
property_control_for - openflexure_microscope_server.ui.property_control_for
property_name - openflexure_microscope_server.ui.PropertyControl.property_name
PropertyControl - openflexure_microscope_server.ui.PropertyControl
purge_empty_scans - openflexure_microscope_server.things.smart_scan.SmartScanThing.purge_empty_scans

R

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

RATIO - openflexure_microscope_server.things.camera.simulation.RATIO
raw_channels_from_camera - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.raw_channels_from_camera
RawCameraDependency - openflexure_microscope_server.things.camera.RawCameraDependency
read_back - openflexure_microscope_server.ui.PropertyControl.read_back
read_back_delay - openflexure_microscope_server.ui.PropertyControl.read_back_delay
ready - openflexure_microscope_server.background_detect.BackgroundDetectorStatus.ready
reboot - openflexure_microscope_server.things.system.OpenFlexureSystem.reboot
REBOOT_CMD - openflexure_microscope_server.things.system.REBOOT_CMD
RecordedMove - openflexure_microscope_server.things.camera_stage_mapping.RecordedMove
recreate_camera_manager - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.recreate_camera_manager
RedefinedBaseMovementError - openflexure_microscope_server.things.stage.RedefinedBaseMovementError
REF_REGEX - openflexure_microscope_server.utilities.REF_REGEX
remaining_locations - openflexure_microscope_server.scan_planners.ScanPlanner.remaining_locations
remove_sample - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.remove_sample
REPO_DIR - openflexure_microscope_server.utilities.REPO_DIR
requires_confirmation - openflexure_microscope_server.ui.ActionButton.requires_confirmation
requires_lock - openflexure_microscope_server.utilities.requires_lock
reset_ccm - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.reset_ccm
reset_lens_shading - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.reset_lens_shading
reset_stack - openflexure_microscope_server.things.autofocus.AutofocusThing.reset_stack
retrieve_log - openflexure_microscope_server.logging.retrieve_log
retrieve_log_from_file - openflexure_microscope_server.logging.retrieve_log_from_file
RNG - openflexure_microscope_server.things.camera.simulation.RNG
robust_version_strings - openflexure_microscope_server.utilities.robust_version_strings
root - openflexure_microscope_server.things.camera.ArrayModel.root
run
- openflexure_microscope_server.stitching.FinalStitcher.run
- openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.run
run_smart_stack - openflexure_microscope_server.things.autofocus.AutofocusThing.run_smart_stack
running
- openflexure_microscope_server.stitching.PreviewStitcher.running
- openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.running

S

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

sample_scan - openflexure_microscope_server.things.smart_scan.SmartScanThing.sample_scan
sangaboard
- openflexure_microscope_server.things.stage.sangaboard
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.sangaboard
sangaboard_kwargs - openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.sangaboard_kwargs
SangaboardThing - openflexure_microscope_server.things.stage.sangaboard.SangaboardThing
save_from_memory - openflexure_microscope_server.things.camera.BaseCamera.save_from_memory
save_resolution
- openflexure_microscope_server.scan_directories.ScanData.save_resolution
- openflexure_microscope_server.things.autofocus.StackParams.save_resolution
- openflexure_microscope_server.things.smart_scan.SmartScanThing.save_resolution
save_scan_data - openflexure_microscope_server.scan_directories.ScanDirectory.save_scan_data
save_settings - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.save_settings
save_stack - openflexure_microscope_server.things.autofocus.AutofocusThing.save_stack
scan_complete - openflexure_microscope_server.scan_planners.ScanPlanner.scan_complete
SCAN_DATA_FILENAME - openflexure_microscope_server.scan_directories.SCAN_DATA_FILENAME
scan_data_path - openflexure_microscope_server.scan_directories.ScanDirectory.scan_data_path
scan_directories - openflexure_microscope_server.scan_directories
scan_info - openflexure_microscope_server.scan_directories.ScanDirectory.scan_info
scan_name - openflexure_microscope_server.scan_directories.ScanData.scan_name
scan_planners - openflexure_microscope_server.scan_planners
scan_result - openflexure_microscope_server.scan_directories.ScanData.scan_result
SCAN_ZERO_PAD_DIGITS - openflexure_microscope_server.scan_directories.SCAN_ZERO_PAD_DIGITS
ScanData - openflexure_microscope_server.scan_directories.ScanData
ScanDirectory - openflexure_microscope_server.scan_directories.ScanDirectory
ScanDirectoryManager - openflexure_microscope_server.scan_directories.ScanDirectoryManager
ScanInfo - openflexure_microscope_server.scan_directories.ScanInfo
ScanNotRunningError - openflexure_microscope_server.things.smart_scan.ScanNotRunningError
ScanPlanner - openflexure_microscope_server.scan_planners.ScanPlanner
scans - openflexure_microscope_server.things.smart_scan.SmartScanThing.scans
secondary_calibration_actions
- openflexure_microscope_server.things.camera.BaseCamera.secondary_calibration_actions
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.secondary_calibration_actions
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.secondary_calibration_actions
select_nearby_focus_site - openflexure_microscope_server.scan_planners.SmartSpiral.select_nearby_focus_site
sensor_mode - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.sensor_mode
sensor_mode.setter - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.sensor_mode.setter
sensor_modes - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.sensor_modes
sensor_resolution - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.sensor_resolution
SensorMode - openflexure_microscope_server.things.camera.picamera.SensorMode
SensorModeSelector - openflexure_microscope_server.things.camera.picamera.SensorModeSelector
serialize_none_as_unknown - openflexure_microscope_server.scan_directories.ScanData.serialize_none_as_unknown
serialize_timedelta - openflexure_microscope_server.scan_directories.ScanData.serialize_timedelta
serialize_timestamp - openflexure_microscope_server.scan_directories.ScanData.serialize_timestamp
serve_from_cli - openflexure_microscope_server.server.serve_from_cli
serve_static_files - openflexure_microscope_server.server.serve_static_files
server - openflexure_microscope_server.server
set_background
- openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm.set_background
- openflexure_microscope_server.background_detect.ColourChannelDetectLUV.set_background
- openflexure_microscope_server.things.camera.BaseCamera.set_background
set_final_data - openflexure_microscope_server.scan_directories.ScanData.set_final_data
set_minimum_exposure - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.set_minimum_exposure
set_shutdown_function - openflexure_microscope_server.server.set_shutdown_function
set_static_ccm - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.set_static_ccm
set_static_geq - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.set_static_geq
set_static_green_equalisation - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.set_static_green_equalisation
set_static_lst - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.set_static_lst
set_zero_position
- openflexure_microscope_server.things.stage.BaseStage.set_zero_position
- openflexure_microscope_server.things.stage.dummy.DummyStage.set_zero_position
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.set_zero_position
settings
- openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm.settings
- openflexure_microscope_server.background_detect.BackgroundDetectorStatus.settings
settings.setter - openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm.settings.setter
settings_schema - openflexure_microscope_server.background_detect.BackgroundDetectorStatus.settings_schema
settle - openflexure_microscope_server.things.camera.BaseCamera.settle
settling_time
- openflexure_microscope_server.things.autofocus.StackParams.settling_time
- openflexure_microscope_server.things.camera.BaseCamera.settling_time
shape - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.shape
sharpest_z_on_move - openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.sharpest_z_on_move
sharpness - openflexure_microscope_server.things.autofocus.CaptureInfo.sharpness
SharpnessDataArrays - openflexure_microscope_server.things.autofocus.SharpnessDataArrays
SharpnessMonitorDep - openflexure_microscope_server.things.autofocus.SharpnessMonitorDep
shutdown - openflexure_microscope_server.things.system.OpenFlexureSystem.shutdown
SHUTDOWN_CMD - openflexure_microscope_server.things.system.SHUTDOWN_CMD
SimulatedCamera - openflexure_microscope_server.things.camera.simulation.SimulatedCamera
simulation - openflexure_microscope_server.things.camera.simulation
size - openflexure_microscope_server.things.camera.picamera.SensorMode.size
skip_background
- openflexure_microscope_server.scan_directories.ScanData.skip_background
- openflexure_microscope_server.things.smart_scan.SmartScanThing.skip_background
slice_to_save - openflexure_microscope_server.things.autofocus.StackParams.slice_to_save
smart_scan - openflexure_microscope_server.things.smart_scan
SmartScanThing - openflexure_microscope_server.things.smart_scan.SmartScanThing
SmartSpiral - openflexure_microscope_server.scan_planners.SmartSpiral
sprites - openflexure_microscope_server.things.camera.simulation.SimulatedCamera.sprites
stack_dz
- openflexure_microscope_server.things.autofocus.AutofocusThing.stack_dz
- openflexure_microscope_server.things.autofocus.StackParams.stack_dz
stack_height_limit - openflexure_microscope_server.things.autofocus.StackParams.stack_height_limit
stack_images_to_save - openflexure_microscope_server.things.autofocus.AutofocusThing.stack_images_to_save
stack_min_images_to_test - openflexure_microscope_server.things.autofocus.AutofocusThing.stack_min_images_to_test
stack_z_range - openflexure_microscope_server.things.autofocus.StackParams.stack_z_range
StackParams - openflexure_microscope_server.things.autofocus.StackParams
stage
- openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.stage
- openflexure_microscope_server.things.stage
stage_positions
- openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.stage_positions
- openflexure_microscope_server.things.autofocus.SharpnessDataArrays.stage_positions
- openflexure_microscope_server.things.camera_stage_mapping.MoveHistory.stage_positions
stage_times
- openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.stage_times
- openflexure_microscope_server.things.autofocus.SharpnessDataArrays.stage_times
StageDependency - openflexure_microscope_server.things.stage.StageDependency
standard_deviations - openflexure_microscope_server.background_detect.ChannelDistributions.standard_deviations
start - openflexure_microscope_server.stitching.PreviewStitcher.start
start_streaming
- openflexure_microscope_server.things.camera.BaseCamera.start_streaming
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.start_streaming
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.start_streaming
start_time - openflexure_microscope_server.scan_directories.ScanData.start_time
starting_position - openflexure_microscope_server.scan_directories.ScanData.starting_position
STATIC_PATH - openflexure_microscope_server.server.serve_static_files.STATIC_PATH
status - openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm.status
step_time - openflexure_microscope_server.things.stage.dummy.DummyStage.step_time
steps_undershoot - openflexure_microscope_server.things.autofocus.StackParams.steps_undershoot
stitch_all_scans - openflexure_microscope_server.things.smart_scan.SmartScanThing.stitch_all_scans
stitch_automatically
- openflexure_microscope_server.scan_directories.ScanData.stitch_automatically
- openflexure_microscope_server.things.smart_scan.SmartScanThing.stitch_automatically
stitch_available - openflexure_microscope_server.scan_directories.ScanInfo.stitch_available
STITCH_REGEX - openflexure_microscope_server.scan_directories.STITCH_REGEX
stitch_scan - openflexure_microscope_server.things.smart_scan.SmartScanThing.stitch_scan
stitch_tiff - openflexure_microscope_server.things.smart_scan.SmartScanThing.stitch_tiff
STITCH_TILE_SIZE - openflexure_microscope_server.stitching.STITCH_TILE_SIZE
StitcherValidationError - openflexure_microscope_server.stitching.StitcherValidationError
stitching - openflexure_microscope_server.stitching
STITCHING_CMD - openflexure_microscope_server.stitching.STITCHING_CMD
STITCHING_RESOLUTION - openflexure_microscope_server.stitching.STITCHING_RESOLUTION
stop_streaming - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.stop_streaming
stream - openflexure_microscope_server.things.camera.picamera.PicameraStreamOutput.stream
stream_active
- openflexure_microscope_server.things.camera.BaseCamera.stream_active
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera.stream_active
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.stream_active
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.stream_active
stream_resolution - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.stream_resolution
streaming - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.streaming
StreamingPiCamera2 - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2
submit_label - openflexure_microscope_server.ui.ActionButton.submit_label
success_message - openflexure_microscope_server.ui.ActionButton.success_message
system - openflexure_microscope_server.things.system

T

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

U

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

ui - openflexure_microscope_server.ui
unpacked - openflexure_microscope_server.things.camera.picamera.SensorMode.unpacked
update_detector_settings - openflexure_microscope_server.things.camera.BaseCamera.update_detector_settings
update_position - openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.update_position
upsample_channels - openflexure_microscope_server.things.camera.picamera_recalibrate_utils.upsample_channels
utilities - openflexure_microscope_server.utilities
UvicornAccessFilter - openflexure_microscope_server.logging.UvicornAccessFilter

V

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

validate_command - openflexure_microscope_server.stitching.validate_command
validate_path - openflexure_microscope_server.stitching.BaseStitcher.validate_path
version - openflexure_microscope_server.utilities.VersionData.version
version_data - openflexure_microscope_server.things.system.OpenFlexureSystem.version_data
version_source - openflexure_microscope_server.utilities.VersionData.version_source
VersionData - openflexure_microscope_server.utilities.VersionData

W

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

wait - openflexure_microscope_server.stitching.PreviewStitcher.wait

X

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

XYCoordinateType - openflexure_microscope_server.things.camera_stage_mapping.XYCoordinateType
XYPos - openflexure_microscope_server.scan_planners.XYPos
XYPosList - openflexure_microscope_server.scan_planners.XYPosList
XYZPos - openflexure_microscope_server.scan_planners.XYZPos
XYZPosList - openflexure_microscope_server.scan_planners.XYZPosList

Z

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

z_move_and_measure_sharpness - openflexure_microscope_server.things.autofocus.AutofocusThing.z_move_and_measure_sharpness
z_stack - openflexure_microscope_server.things.autofocus.AutofocusThing.z_stack
zip_files - openflexure_microscope_server.scan_directories.ScanDirectory.zip_files
zip_scan - openflexure_microscope_server.scan_directories.ScanDirectoryManager.zip_scan
ZipBlob - openflexure_microscope_server.things.smart_scan.ZipBlob

_

A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - R - S - T - U - V - W - X - Z - _

__call__ - openflexure_microscope_server.things.camera_stage_mapping.RecordedMove.__call__
__enter__
- openflexure_microscope_server.things.camera.BaseCamera.__enter__
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera.__enter__
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.__enter__
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.__enter__
- openflexure_microscope_server.things.stage.dummy.DummyStage.__enter__
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.__enter__
__exit__
- openflexure_microscope_server.things.camera.BaseCamera.__exit__
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera.__exit__
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.__exit__
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.__exit__
- openflexure_microscope_server.things.stage.dummy.DummyStage.__exit__
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.__exit__
__init__
- openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm.__init__
- openflexure_microscope_server.logging.OFMHandler.__init__
- openflexure_microscope_server.scan_directories.ScanDirectory.__init__
- openflexure_microscope_server.scan_directories.ScanDirectoryManager.__init__
- openflexure_microscope_server.scan_planners.ScanPlanner.__init__
- openflexure_microscope_server.stitching.BaseStitcher.__init__
- openflexure_microscope_server.stitching.FinalStitcher.__init__
- openflexure_microscope_server.stitching.PreviewStitcher.__init__
- openflexure_microscope_server.things.autofocus.JPEGSharpnessMonitor.__init__
- openflexure_microscope_server.things.autofocus.StackParams.__init__
- openflexure_microscope_server.things.camera.BaseCamera.__init__
- openflexure_microscope_server.things.camera.CameraMemoryBuffer.__init__
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera.__init__
- openflexure_microscope_server.things.camera.picamera.PicameraStreamOutput.__init__
- openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2.__init__
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera.__init__
- openflexure_microscope_server.things.camera_stage_mapping.CSMUncalibratedError.__init__
- openflexure_microscope_server.things.camera_stage_mapping.RecordedMove.__init__
- openflexure_microscope_server.things.smart_scan.SmartScanThing.__init__
- openflexure_microscope_server.things.stage.BaseStage.__init__
- openflexure_microscope_server.things.stage.dummy.DummyStage.__init__
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing.__init__
- openflexure_microscope_server.utilities.ErrorCapturingThread.__init__
_add_surrounding_positions - openflexure_microscope_server.scan_planners.SmartSpiral._add_surrounding_positions
_analogue_gain - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._analogue_gain
_apply_axis_direction - openflexure_microscope_server.things.stage.BaseStage._apply_axis_direction
_autofocus - openflexure_microscope_server.things.smart_scan.SmartScanThing._autofocus
_axis_names - openflexure_microscope_server.things.stage.BaseStage._axis_names
_background_data - openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm._background_data
_base_scan_dir
- openflexure_microscope_server.scan_directories.ScanDirectory._base_scan_dir
- openflexure_microscope_server.scan_directories.ScanDirectoryManager._base_scan_dir
_calc_displacement_from_test_image - openflexure_microscope_server.things.smart_scan.SmartScanThing._calc_displacement_from_test_image
_cam - openflexure_microscope_server.things.smart_scan.SmartScanThing._cam
_cancel - openflexure_microscope_server.things.smart_scan.SmartScanThing._cancel
_capture_enabled
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera._capture_enabled
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera._capture_enabled
_capture_frames
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera._capture_frames
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera._capture_frames
_capture_thread
- openflexure_microscope_server.things.camera.opencv.OpenCVCamera._capture_thread
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera._capture_thread
_check_background_and_csm_set - openflexure_microscope_server.things.smart_scan.SmartScanThing._check_background_and_csm_set
_collect_scan_data - openflexure_microscope_server.things.smart_scan.SmartScanThing._collect_scan_data
_colour_gains - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._colour_gains
_create_space - openflexure_microscope_server.things.camera.CameraMemoryBuffer._create_space
_csm - openflexure_microscope_server.things.smart_scan.SmartScanThing._csm
_current_position - openflexure_microscope_server.things.camera_stage_mapping.RecordedMove._current_position
_delete_scan - openflexure_microscope_server.things.smart_scan.SmartScanThing._delete_scan
_detector_name - openflexure_microscope_server.things.camera.BaseCamera._detector_name
_dx - openflexure_microscope_server.scan_planners.SmartSpiral._dx
_dy - openflexure_microscope_server.scan_planners.SmartSpiral._dy
_error_buffer - openflexure_microscope_server.utilities.ErrorCapturingThread._error_buffer
_exposure_time - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._exposure_time
_extra_args
- openflexure_microscope_server.stitching.BaseStitcher._extra_args
- openflexure_microscope_server.stitching.FinalStitcher._extra_args
_extract_dzi_files - openflexure_microscope_server.scan_directories.ScanDirectory._extract_dzi_files
_extract_final_stitches - openflexure_microscope_server.scan_directories.ScanDirectory._extract_final_stitches
_extract_scan_images - openflexure_microscope_server.scan_directories.ScanDirectory._extract_scan_images
_focused_locations - openflexure_microscope_server.scan_planners.ScanPlanner._focused_locations
_geq_is_static - openflexure_microscope_server.things.camera.picamera_recalibrate_utils._geq_is_static
_get_capture_by_id - openflexure_microscope_server.things.autofocus._get_capture_by_id
_get_capture_index_by_id - openflexure_microscope_server.things.autofocus._get_capture_index_by_id
_get_hash_from_git_dir - openflexure_microscope_server.utilities._get_hash_from_git_dir
_get_hash_from_git_ref - openflexure_microscope_server.utilities._get_hash_from_git_ref
_get_persistent_controls - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._get_persistent_controls
_get_scans_dir - openflexure_microscope_server.server._get_scans_dir
_get_version_from_toml - openflexure_microscope_server.utilities._get_version_from_toml
_hardware_move_absolute
- openflexure_microscope_server.things.stage.BaseStage._hardware_move_absolute
- openflexure_microscope_server.things.stage.dummy.DummyStage._hardware_move_absolute
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing._hardware_move_absolute
_hardware_move_relative
- openflexure_microscope_server.things.stage.BaseStage._hardware_move_relative
- openflexure_microscope_server.things.stage.dummy.DummyStage._hardware_move_relative
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing._hardware_move_relative
_hardware_position
- openflexure_microscope_server.things.stage.BaseStage._hardware_position
- openflexure_microscope_server.things.stage.dummy.DummyStage._hardware_position
- openflexure_microscope_server.things.stage.sangaboard.SangaboardThing._hardware_position
_history - openflexure_microscope_server.things.camera_stage_mapping.RecordedMove._history
_imaged_locations - openflexure_microscope_server.scan_planners.ScanPlanner._imaged_locations
_initial_location_list
- openflexure_microscope_server.scan_planners.ScanPlanner._initial_location_list
- openflexure_microscope_server.scan_planners.SmartSpiral._initial_location_list
_initial_position - openflexure_microscope_server.scan_planners.ScanPlanner._initial_position
_initialise_picamera - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._initialise_picamera
_is_lock_like - openflexure_microscope_server.utilities._is_lock_like
_latest_id - openflexure_microscope_server.things.camera.CameraMemoryBuffer._latest_id
_latest_scan_name - openflexure_microscope_server.things.smart_scan.SmartScanThing._latest_scan_name
_lock - openflexure_microscope_server.scan_directories.ScanDirectoryManager._lock
_log - openflexure_microscope_server.logging.OFMHandler._log
_log_ongoing - openflexure_microscope_server.stitching.FinalStitcher._log_ongoing
_main_scan_loop - openflexure_microscope_server.things.smart_scan.SmartScanThing._main_scan_loop
_manage_stitching_threads - openflexure_microscope_server.things.smart_scan.SmartScanThing._manage_stitching_threads
_max_dist - openflexure_microscope_server.scan_planners.SmartSpiral._max_dist
_max_logs - openflexure_microscope_server.logging.OFMHandler._max_logs
_memory_buffer - openflexure_microscope_server.things.camera.BaseCamera._memory_buffer
_microscope_id - openflexure_microscope_server.things.system.OpenFlexureSystem._microscope_id
_mode
- openflexure_microscope_server.stitching.BaseStitcher._mode
- openflexure_microscope_server.stitching.FinalStitcher._mode
- openflexure_microscope_server.stitching.PreviewStitcher._mode
_move_to_next_point - openflexure_microscope_server.things.smart_scan.SmartScanThing._move_to_next_point
_name - openflexure_microscope_server.scan_directories.ScanDirectory._name
_NAME_UNSAFE_PATTERN - openflexure_microscope_server.utilities._NAME_UNSAFE_PATTERN
_ongoing_scan - openflexure_microscope_server.things.smart_scan.SmartScanThing._ongoing_scan
_parse
- openflexure_microscope_server.scan_planners.ScanPlanner._parse
- openflexure_microscope_server.scan_planners.SmartSpiral._parse
_path_history - openflexure_microscope_server.scan_planners.ScanPlanner._path_history
_perform_final_stitch - openflexure_microscope_server.things.smart_scan.SmartScanThing._perform_final_stitch
_picamera - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._picamera
_picamera_lock - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._picamera_lock
_popen_lock - openflexure_microscope_server.stitching.PreviewStitcher._popen_lock
_popen_obj - openflexure_microscope_server.stitching.PreviewStitcher._popen_obj
_POSIX_UNSAFE_PATTERN - openflexure_microscope_server.utilities._POSIX_UNSAFE_PATTERN
_preview_stitcher - openflexure_microscope_server.things.smart_scan.SmartScanThing._preview_stitcher
_process_inputs - openflexure_microscope_server.stitching.FinalStitcher._process_inputs
_re_sort_remaining_locations - openflexure_microscope_server.scan_planners.SmartSpiral._re_sort_remaining_locations
_remaining_locations - openflexure_microscope_server.scan_planners.ScanPlanner._remaining_locations
_return_to_starting_position - openflexure_microscope_server.things.smart_scan.SmartScanThing._return_to_starting_position
_robust_image_capture - openflexure_microscope_server.things.camera.BaseCamera._robust_image_capture
_run_scan - openflexure_microscope_server.things.smart_scan.SmartScanThing._run_scan
_sangaboard - openflexure_microscope_server.things.stage.sangaboard.SangaboardThing._sangaboard
_sangaboard_lock - openflexure_microscope_server.things.stage.sangaboard.SangaboardThing._sangaboard_lock
_save_capture - openflexure_microscope_server.things.camera.BaseCamera._save_capture
_save_final_scan_data - openflexure_microscope_server.things.smart_scan.SmartScanThing._save_final_scan_data
_scan_data - openflexure_microscope_server.things.smart_scan.SmartScanThing._scan_data
_scan_dir_manager - openflexure_microscope_server.things.smart_scan.SmartScanThing._scan_dir_manager
_scan_lock - openflexure_microscope_server.things.smart_scan.SmartScanThing._scan_lock
_scan_logger - openflexure_microscope_server.things.smart_scan.SmartScanThing._scan_logger
_scan_running - openflexure_microscope_server.things.smart_scan._scan_running
_sensor_mode - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._sensor_mode
_sensor_modes - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._sensor_modes
_server - openflexure_microscope_server.things.camera.simulation.SimulatedCamera._server
_setting_save_in_progress - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._setting_save_in_progress
_settings - openflexure_microscope_server.background_detect.BackgroundDetectAlgorithm._settings
_show_sample - openflexure_microscope_server.things.camera.simulation.SimulatedCamera._show_sample
_stage
- openflexure_microscope_server.things.camera.simulation.SimulatedCamera._stage
- openflexure_microscope_server.things.camera_stage_mapping.RecordedMove._stage
- openflexure_microscope_server.things.smart_scan.SmartScanThing._stage
_storage - openflexure_microscope_server.things.camera.CameraMemoryBuffer._storage
_streaming_picamera - openflexure_microscope_server.things.camera.picamera.StreamingPiCamera2._streaming_picamera
_unique_scan_name - openflexure_microscope_server.scan_directories.ScanDirectoryManager._unique_scan_name
_version_data - openflexure_microscope_server.things.system.OpenFlexureSystem._version_data
_WINDOWS_UNSAFE_PATTERN - openflexure_microscope_server.utilities._WINDOWS_UNSAFE_PATTERN
_wrap_and_catch_errors - openflexure_microscope_server.utilities._wrap_and_catch_errors